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Light Microscopy Facility Computers

Deep Thought

Location: Room 2.19A, Medawar Building

Offline analysis PC for general deconvolution, processing of data from the Carl Zeiss Multiphoton and Nikon NSTORM microscopes

• Dell Precision T7600
• Windows 7 64-bit
• 2x Intel XEON CPU E5-2620 2 GHz processors, 6 cores 12 logical processors
• 160 GB RAM
• AMD Radeon HD 7800 2 GB graphics card
• 2 TB C drive
• Software
  • Huygens Essential 16.05 with licences to deconvolve confocal, spinning disc, multiphoton and widefield data
  • Zen 2.1 Sp3 version 14.0.0.201 with modules for Airyscan processing, FRAP analysis, FCS analysis tools (FCS Basis, FCS Extended, FCS PCH) and linear unmixing
  • Nikon NIS-Elements 5.01 with module for processing molecular localisation data from the NSTORM microscope
  • SlideBook 6.0.15 full offline package for 3i spinning disc microscope
  • Volocity 6.3
  • Fiji
  • LAS AF Lite version 2.6.3
  • LAS X version 3.0.1.15878
  • Olympus FV10-ASW Viewer

Contact LM Facility for training and all other enquiries

Zen

Location: Room 2.20, Medawar Building

Offline analysis PC for data from Carl Zeiss Elyra PS1 super-resolution microscope

• HP Z840
• Windows 7 64-bit
• 2x Intel XEON CPU E5-2623, 3 GHz, 4 cores 8 logical processors
• 64 GB RAM
• NVidia Quadro K2200 1 GB graphics card
• 256 GB C drive and 1.5 TB D drive
• Software
  • Zen 2012 SP2 version 11.0.3.190 SP5 with analysis modules for PALM, 3D PALM and SIM as well as linear unmixing
  • FlowJo v 10.8.1
  • SlideBook Reader 6.0.4
  • Fiji

Contact: Ki Hng

Orac

Offline analysis PC for data from Leica Microsystems STED super-resolution microscope

• Novatech
• Intel Core i7-4770K CPU, 3.5 GHz, 4 cores 8 logical processors
• 16 GB RAM
• NVidia GeForce GTX 660 2 GB graphics card
• 100 GB system disc and 2 TB data drive
• Software
  • Huygens Professional 14.10 with licences for deconvolution of confocal and STED data
  • LAS AF 3.3.0
  • SlideBook Reader 6.0.4
  • Fiji

Contact Ki Hng.

Beast

Processor: 2x LM Facility for training and all other enquiries

Marvin

Location: Room 2.19A, Medawar Building

Offline analysis PC 

• Fujitsu D3598-B1
• Windows 10 Pro
• Intel(R) Xeon(R) W-2295 CPU @ 3.00GHz, 3000 Mhz, 18 Core(s), 36 Logical Processor(s)
• 512 GB RAM
• NVIDIA RTX A4000, 16GB 4DP graphics card
• 1.8TB C Drive, 3.64TB D, E, F & G Drives
• Software
  • Imaris 10
  • Huygens Professional
  • Carl Zeiss Zen Blue 3.2 analysis licence for LSM 900 Airyscan 2. Includes Airyscan Processing, 3DXL and Direct Processing.
  • LAS X 3.5.5
  • Fiji

Contact LM Facility for training and all other enquiries

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Electron Microscopy Facility Computers

Beast

Location: Room 2.19A, Medawar Building

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• SuperMicro X8DA3
• Windows 7 64-bit
• 2x Intel XEON CPU X5650 2.67 GHz, 6 cores, 12 logical processors

RAM: 96 GB

• 96 GB RAM
• NVidia Quadro K6000 1 GB graphic card
• 100 GB C drive, 1 TB D drive, 4 TB F drive
• Software
  • Imaris 7.6.5
  • Amira 6
  • iTEM
  • Graphpad Prism 7
  • R 3.2
  • Volocity 6.3
  • LAS AF Lite 2.4.1
  • Fiji

Contact Jemima Burden or Ian White for training on Amira and Andrew Vaughan for Imaris, LAS AF and Volocity. This machine is administered by the Electron Microscopy Facility and booking is through the MRCLMCB_EM Faces Scheduling System group.Contact Jemima Burden

Son of Beast

Processor: Location: Room 2.19A, Medawar Building

• SuperMicro X8DA3
• Windows 7 64-bit
• 2x Intel XEON CPU X5650 2.67 GHz, 6 cores, 12 logical processors

RAM: 96 GB

Software: Volocity 6.3, Amira 5.4.2

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• 96 GB RAM
• NVidia GeForce GTX 580 1 GB graphics card
• 111 GB C drive, 896 GB D drive, 4 TB F drive
• Software
  • Amira 6
  • iTEM
  • Graphpad Prism 7
  • R 3.1.3
  • Volocity 6.3
  • Nikon NIS-Elements 4.6
  • SID4Bio
  • Fiji

Contact Jemima Burden